rs259276411 SNP Detail

Summary

• ID
  rs259276411
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:112063326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATCGTCC CTTTCAATTC
  CCTTCCCAGA TTTCAATTTC TGCCTGCTTT GAGGGAAAGA GAGTCCACCC ATGCCTTCCG
  CCGAGACATA GAAACAAGAT AAACAACACA GAAACGACAA ACAGGTCAAA GGGAAAGCAC
  AGATAGATGG TAGAAAGAAA AAAAAAGGGG GAGGGGGCAG CAGAAGCAGA AAGCCCCAAC
  W
  GCCAGACACA AAGGGCTTGT GATGCTCATG TCGGAAGACT TGGCTCTTTA CCTGAAGGAA
  CAGTGGAGTG ACCCAGCGTC CCGGGTGCCT TGACTGACTG GATTTCGTTT GGGGCTTTTG
  TGAGTAATTA TTGTTTCTCA GTGAATGCTT TGGTTGGGTC AGTTTGGTTT GTGGCTTGCC
  TTTGTTGTTT GGTCGATTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378948979	MGP_WTSI_9_112136762	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259276411					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378948979	MGP_WTSI_9_112136762	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112063326 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900079G21Rik	RIKEN cDNA 2900079G21 gene			19 bp upstream
Arpp21	cyclic AMP-regulated phosphoprotein, 21			Intron
				Noncoding-Transcript-Variant
Cpgi22409	CpG island 22409			87 bp proximal
Gm68368	predicted gene, 68368			767 bp downstream
Rr687419	regulatory region 687419			1768 bp distal
Rr687420	regulatory region 687420			1267 bp distal
Rr687421	regulatory region 687421			within coordinates
Rr687422	regulatory region 687422			76 bp proximal
Rr687423	regulatory region 687423			750 bp proximal
Tssr87517	transcription start site region 87517			7 bp downstream
Tssr87518	transcription start site region 87518			within coordinates
Tssr91795	transcription start site region 91795			1872 bp upstream
Tssr91796	transcription start site region 91796			1836 bp upstream
Tssr91797	transcription start site region 91797			1798 bp upstream
Tssr91798	transcription start site region 91798			1130 bp upstream
Tssr91799	transcription start site region 91799			1004 bp upstream
Tssr91800	transcription start site region 91800			989 bp upstream
Tssr91801	transcription start site region 91801			972 bp upstream
Tssr91802	transcription start site region 91802			935 bp upstream
Tssr91803	transcription start site region 91803			846 bp upstream
Tssr91804	transcription start site region 91804			688 bp upstream
Tssr91805	transcription start site region 91805			333 bp downstream
Tssr91806	transcription start site region 91806			369 bp downstream
Tssr91807	transcription start site region 91807			550 bp downstream
Tssr91808	transcription start site region 91808			572 bp downstream
Tssr91809	transcription start site region 91809			626 bp downstream
Tssr91810	transcription start site region 91810			698 bp downstream
Tssr91811	transcription start site region 91811			884 bp downstream
Tssr91812	transcription start site region 91812			1194 bp downstream
Tssr91813	transcription start site region 91813			1253 bp downstream
Tssr91814	transcription start site region 91814			1572 bp downstream
Tssr91815	transcription start site region 91815			1596 bp downstream
Tssr91816	transcription start site region 91816			1631 bp downstream
Tssr91817	transcription start site region 91817			1642 bp downstream
Tssr91818	transcription start site region 91818			1661 bp downstream
Tssr91819	transcription start site region 91819			1682 bp downstream
Tssr91820	transcription start site region 91820			1708 bp downstream