rs259276821 SNP Detail

Summary

• ID
  rs259276821
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54750159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCGCGCG CACACACACA
  CACACACACA CACACACACG AGACTAGGTG TCTAGATGTC CCTGCATCTT AGAAAGTGGA
  GAAGGGAGGA TCACTTGATC CCAAAGTTTA AGACCATAGG AAGTCTGCAG TGTGGAACAC
  TAAAGGATAG TAATCGGAGT AATTTTATAT AGTACTTCCT GGGGAGTGGG GGTGTCCATT
  M
  ATATAAAAAC AGCACCACTA GCTTAAGACC ATTATCCTAA TAAAAAGAAA ATGGGGGCTG
  GAGAGATGGC TCTGAGGTTA AAGCACTGGC TGCTCTCACA AAGGAACCAG GCTCTTCCCA
  TCAGCCATAC TGCAGCTGAC AACCTCCTGT AACTTCGGTT CCAAGGAATC TGACACCCTC
  TTCTGGCCTC TGTGAGTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383427706	MGP_WTSI_11_54672835	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259276821					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383427706	MGP_WTSI_11_54672835	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54750159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	1154 bp proximal
Gm31490	predicted gene, 31490	481 bp upstream
Gm57377	predicted gene, 57377	1454 bp upstream
Lyrm7	LYR motif containing 7	within coordinates
Rr386093	regulatory region 386093	within coordinates
Rr447402	regulatory region 447402	625 bp distal
Rr447403	regulatory region 447403	170 bp proximal
Rr447404	regulatory region 447404	964 bp proximal
Rr447405	regulatory region 447405	1266 bp proximal
Rr447406	regulatory region 447406	1465 bp proximal
Rr447407	regulatory region 447407	1569 bp proximal
Rr447408	regulatory region 447408	1771 bp proximal
Tssr3501	transcription start site region 3501	1434 bp upstream
Tssr101539	transcription start site region 101539	1457 bp upstream
Tssr101540	transcription start site region 101540	1682 bp upstream
Tssr108005	transcription start site region 108005	1231 bp downstream