rs259278041 SNP Detail

Summary

• ID
  rs259278041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128518225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCATTCA AACAAAGAAG TCACTCTCAA
  AACTGTGTGC GGTGGTATCC AGCGGCGTGG GGTTAAAGTC TGTGTTGAAG GAGATGGGAT
  TTCTGTATGA GGATTAGCCa aaggaggaag gaaagaaaga aagaaagaaa gaaagagaga
  R
  agagagagag agagagagag agagagagag agagaaagaa agaaagaaag aaagaaagaa
  agaaagaaag aaagaaagaa agaaagaaag aaagaaagaa agaaagaaag aaagaaagaC
  GGAGCTTGAC GGTGGGGGTC CCCCAAAGAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319965173	CHEV_1_130487065	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259278041					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128518225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	296 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Gm57160	predicted gene, 57160	1887 bp upstream
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	595 bp upstream
Rr396264	regulatory region 396264	1664 bp upstream
Tssr196	transcription start site region 196	1748 bp downstream
Tssr8536	transcription start site region 8536	466 bp upstream
Tssr8537	transcription start site region 8537	789 bp upstream
Tssr8538	transcription start site region 8538	817 bp upstream
Tssr8539	transcription start site region 8539	831 bp upstream
Tssr8540	transcription start site region 8540	1957 bp upstream
Tssr13462	transcription start site region 13462	1856 bp upstream
Tssr13463	transcription start site region 13463	1756 bp upstream
Tssr13464	transcription start site region 13464	1714 bp upstream
Tssr13465	transcription start site region 13465	1701 bp upstream
Tssr13466	transcription start site region 13466	1630 bp upstream
Tssr13467	transcription start site region 13467	1588 bp upstream
Tssr13468	transcription start site region 13468	1502 bp upstream
Tssr13469	transcription start site region 13469	1448 bp upstream
Tssr13470	transcription start site region 13470	1358 bp upstream
Tssr13471	transcription start site region 13471	1286 bp upstream
Tssr13472	transcription start site region 13472	1218 bp upstream
Tssr13473	transcription start site region 13473	1203 bp upstream
Tssr13474	transcription start site region 13474	1142 bp upstream
Tssr13475	transcription start site region 13475	1121 bp upstream
Tssr13476	transcription start site region 13476	1109 bp upstream
Tssr13477	transcription start site region 13477	1043 bp upstream
Tssr13478	transcription start site region 13478	328 bp downstream
Tssr13479	transcription start site region 13479	357 bp downstream
Tssr13480	transcription start site region 13480	679 bp downstream
Tssr13481	transcription start site region 13481	1796 bp downstream