rs259280938 SNP Detail

Summary

• ID
  rs259280938
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145811063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGATTA AAAAAAAAAA
  AGCCAAACCG ACGCCTAGAC AGATATTCGC AACGGTGCGT ACACCTTACC CTATAAAATC
  CCTATGTTCC AGTAACTGTC TCTCTTGCAA ATGAGGGATT CCTTCGTCCA TGTTCAATGG
  CTGTCCGTTT CGATTTGGAG GTTTCTGTCC TGTAATCTGT GGGACGGTCG CCTGGAGAGA
  W
  TTTGGGGGGA TGTGTGCGTC TCCAGGCTGT CTCGCTCTCC CTCTTCAGTG CAGTATTGAA
  AGTGTGAAGC AGTTGGCCGC CCCTCCGCCC CGTGCTCGCT CGCTCGCCCT CTCGCACACC
  CGCGCGCGCA CACCCGCGCG CACACACGCA CTGCGCTGGT AGTTTGCTCT CACTCCGGGC
  AGTGTTTGGC CACAGGGCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370464785	MGP_WTSI_6_145813857	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259280938					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370464785	MGP_WTSI_6_145813857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145811063 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe41	basic helix-loop-helix family, member e41	within coordinates
Cpgi18162	CpG island 18162	1155 bp distal
Cpgi18163	CpG island 18163	within coordinates
Gm43909	predicted gene, 43909	165 bp downstream
Gm67122	predicted gene, 67122	within coordinates
Gm67128	predicted gene, 67128	714 bp downstream
Gm67129	predicted gene, 67129	347 bp upstream
Rr641235	regulatory region 641235	1446 bp distal
Rr641236	regulatory region 641236	1283 bp distal
Rr641237	regulatory region 641237	within coordinates
Rr641238	regulatory region 641238	358 bp proximal
Tssr59562	transcription start site region 59562	1451 bp downstream
Tssr59563	transcription start site region 59563	338 bp upstream
Tssr64080	transcription start site region 64080	1726 bp upstream
Tssr64081	transcription start site region 64081	1695 bp upstream
Tssr64082	transcription start site region 64082	1672 bp upstream
Tssr64083	transcription start site region 64083	1555 bp upstream
Tssr64084	transcription start site region 64084	1502 bp upstream
Tssr64085	transcription start site region 64085	615 bp upstream
Tssr64086	transcription start site region 64086	446 bp upstream
Tssr64087	transcription start site region 64087	within coordinates
Tssr64088	transcription start site region 64088	34 bp downstream
Tssr64089	transcription start site region 64089	48 bp downstream
Tssr64090	transcription start site region 64090	95 bp downstream
Tssr64091	transcription start site region 64091	107 bp downstream
Tssr64092	transcription start site region 64092	146 bp downstream
Tssr64093	transcription start site region 64093	211 bp downstream
Tssr64094	transcription start site region 64094	227 bp downstream