rs259286824 SNP Detail

Summary

• ID
  rs259286824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74269052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG AATGAGAAGC TTCTTCCTGT
  Y
  CTATGTCCCC TTAATTTTCT GTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324434591	CHEV_13_74258381	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259286824					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74269052 () rs orientation: forward

Symbol	Name	Function Class
0610040A22Rik	RIKEN cDNA 0610040A22 gene	within coordinates
Cpgi5859	CpG island 5859	83 bp proximal
Gm41003	predicted gene, 41003	1168 bp upstream
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	524 bp upstream
Tssr120348	transcription start site region 120348	472 bp upstream
Tssr120349	transcription start site region 120349	502 bp upstream
Tssr120350	transcription start site region 120350	1585 bp upstream