rs259295289 SNP Detail

Summary

• ID
  rs259295289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCGAGCC GTAGAACACT
  TGATAAAGCC AAGTCCCAAG GTTTGCCTTC CCATCCTTAC TGAACTTTTA AAAGGCCGAG
  TAGGATGGCT CACAGCCTTT GCATACAGCC ATTGCGGTGC CTTGCAGTGG AGATCAGTAA
  CATGTACCCT TTCCACTTTC AGTCTTGTTA TTTTGACCGA GATGATGTGG CTCTGAAGAA
  Y
  TTTGCCAAAT ACTTTCTCCA CCAATCTCAT GAGGAGAGGG AGCATGCCGA GAAACTGATG
  AAGCTGCAGA ACCAGCGAGG TGGCCGAATC TTCCTGCAGG ATATAAAGGT AAGTAGATCC
  TAGGGGTGCC CTAAATGAGC GGTTAGACTT TATTCAGGAA ATGATGGTGC ACTGAGGCTT
  CTGTCCTTGT GTTGTTGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401720062	MGP_WTSI_19_10058709	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259295289					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401720062	MGP_WTSI_19_10058709	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961583 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	955 bp downstream
Cpgi10595	CpG island 10595	834 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Gm36913	predicted gene, 36913	1699 bp upstream
Rr543964	regulatory region 543964	1712 bp distal
Rr543965	regulatory region 543965	1486 bp distal
Rr543966	regulatory region 543966	217 bp distal
Rr543967	regulatory region 543967	112 bp proximal
Tssr155003	transcription start site region 155003	1508 bp downstream
Tssr155004	transcription start site region 155004	1367 bp downstream
Tssr155005	transcription start site region 155005	1101 bp downstream
Tssr155006	transcription start site region 155006	within coordinates
Tssr155007	transcription start site region 155007	28 bp upstream
Tssr155008	transcription start site region 155008	338 bp upstream
Tssr155009	transcription start site region 155009	684 bp upstream
Tssr155010	transcription start site region 155010	874 bp upstream
Tssr158131	transcription start site region 158131	1784 bp upstream
Tssr158132	transcription start site region 158132	1770 bp upstream
Tssr158133	transcription start site region 158133	1713 bp upstream
Tssr158134	transcription start site region 158134	1688 bp upstream
Tssr158135	transcription start site region 158135	1652 bp upstream
Tssr158136	transcription start site region 158136	1279 bp upstream
Tssr158137	transcription start site region 158137	within coordinates
Tssr158138	transcription start site region 158138	46 bp downstream
Tssr158139	transcription start site region 158139	366 bp downstream
Tssr158140	transcription start site region 158140	587 bp downstream
Tssr158141	transcription start site region 158141	638 bp downstream
Tssr158142	transcription start site region 158142	654 bp downstream
Tssr158143	transcription start site region 158143	713 bp downstream
Tssr158144	transcription start site region 158144	870 bp downstream