rs259297024 SNP Detail

Summary

• ID
  rs259297024
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23923917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCGTATT GGACTGCAAG
  GTGATTTGAA AGTTCCGCCC TGCTTGTGGG TTGGCTCACT CCGGCCCAGG ACTCTAGTTC
  TTCGTTTGAT TGGGCGCCAT CCCGAAGTTT GAGCTTCCTG CCTGGAGAAA CGCATCCGGG
  GCTTGTAGGT GGCTTCTATG CTCAGCCTCT TGTGGGGGTT AGCCTGGAAG TTTGGGAGAA
  K
  GTGGGGTGCT GGCGCCAACG AACTGCCTTC CTTAATATTA AAGACATGGG GTAGCTGCCG
  GAACGACTAG CCTGCACAGT TAAGTTGGAC TCGGGACTGA GACGATTGCT TCTCGTACTT
  TCGGTTTGTT TGCCACAGCG ATGGAGTTGT GGGTTGAACT GCGTCACAAC CTTTTGTCAG
  CCATTTTTTT TTCAAGTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387989010	MGP_WTSI_13_23831803	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259297024					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387989010	MGP_WTSI_13_23831803	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23923917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	within coordinates
H1f2	H1.2 linker histone, cluster member	mRNA-UTR
Rr369656	regulatory region 369656	within coordinates
Rr388130	regulatory region 388130	1722 bp upstream
Rr475930	regulatory region 475930	1116 bp distal
Rr475931	regulatory region 475931	748 bp distal
Rr475932	regulatory region 475932	1877 bp proximal
Tssr118854	transcription start site region 118854	1125 bp downstream
Tssr118855	transcription start site region 118855	736 bp downstream
Tssr118856	transcription start site region 118856	within coordinates
Tssr118857	transcription start site region 118857	192 bp upstream