rs259297621 SNP Detail

Summary

• ID
  rs259297621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160901954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGTGCTCA GCCTTCATGG TGGTCTCGGA
  AGTCTCCTTT GTAACGTGCA TATTACATTA TTTGACTTAT TCTAGAGTTC ATACTGAAAG
  GTTTCTTGTA TTGATATTTC TTTTCACAAT AAGAGAATAG TAGCTAAGAT AAGAAACGAG
  K
  ATGATGTAGA AAAGGTGGAG AGTAGAAAAG AGAGAGAGTA AGAATGTGCA TGTAAGAGAA
  CAATGTGCAT GAATTAACtt tttatatatt ttttttatat ttttttttCT TCTTGTTCCG
  GCCTCGCTAT CTCAGGCCCa aagatttatt                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320080215	CHEV_1_163004515	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259297621					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160901954 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			1903 bp upstream
Rr421753	regulatory region 421753			1639 bp distal
Rr421754	regulatory region 421754			1850 bp proximal