rs259301110 SNP Detail

Summary

• ID
  rs259301110
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43421243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAAATGG AAGGTATCAG GAAAACCCGC
  GCAGAGCCCG TAGATGAAAA GAGTGTAGAA GCTTCCGGCG ACACGGTTTA GGAACAATGT
  TTCTAGCCAG GCTGTTTTCG TTTAAAACGA AAGCAAAGCC CTTTCCACAG CAGGATGGTC
  M
  AGGGGAGCTA GATGCTGTGG GCCTGGGAGC CATCTGTGTG AAAGTCTGAA ACACAGCTAC
  CTTTGCCAGG GAGCACTTGC TCAGTGAGGT GAGCACGGAG CCTCCAAACA TGCCTTGACA
  CCTGCAGAGT TGAGAAAGTG GAGAGGCAGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321097685	CHEV_4_43434115	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259301110					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43421243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14186	CpG island 14186	271 bp proximal
Rr88983	regulatory region 88983	243 bp distal
Rr94013	regulatory region 94013	958 bp proximal
Rr98031	regulatory region 98031	441 bp proximal
Rr104664	regulatory region 104664	243 bp distal
Rusc2	RUN and SH3 domain containing 2	within coordinates