rs259302596 SNP Detail

Summary

• ID
  rs259302596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:30673412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGAAGT GCGGCTCGGG
  AGTCGCTCTG GCCTTCCAGG AGCGAAGCTC TATGGCAGGT CCTCCGGGGC TGCCGAACCG
  CTCTGGCCGC TTCCGCGACG GCTCGATGGT AGGTCCTCCC CCAAGCACGA GGAGCAGCTC
  TGGCCACCGC TAGGTCGACT CTATGGCGCG TCTTCCAACT CTGAGCATGC GCAGGACTAC
  Y
  CCGCCAGTAT CGCTATGGTA GCGGCGTCCG GGTGGGCCGG GCCTCGAAGC TCCTGCCCGC
  GGTGGGCCGC GTTTATGGAG TACTTCACCT CCCGTCTGGC ATGAGCGGGG CCTCCCGCAG
  CCTTACGCGC CGCTGCCACA GCTTCCCGAC TGTAGGCCTC CTTCGGGAAC ATGCCCCAGG
  CCGCATACTG CTACATGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390693761	MGP_WTSI_14_31764641	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259302596					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390693761	MGP_WTSI_14_31764641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30673412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6278	CpG island 6278	within coordinates
Gm41121	predicted gene, 41121	172 bp upstream
Nek4	NIMA (never in mitosis gene a)-related expressed kinase 4	mRNA-UTR
Rr404045	regulatory region 404045	within coordinates
Rr489933	regulatory region 489933	183 bp distal
Rr489934	regulatory region 489934	68 bp distal
Rr489935	regulatory region 489935	within coordinates
Rr489936	regulatory region 489936	300 bp proximal
Tssr124896	transcription start site region 124896	40 bp downstream
Tssr124897	transcription start site region 124897	5 bp downstream
Tssr124898	transcription start site region 124898	within coordinates
Tssr124899	transcription start site region 124899	32 bp upstream
Tssr124900	transcription start site region 124900	76 bp upstream
Tssr127906	transcription start site region 127906	166 bp upstream