rs259306349 SNP Detail

Summary

• ID
  rs259306349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115052312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTCTGGC TTTCCCAACC
  CTCCTTCTGG AAGCGTGCAC GGGCTTTTTC TTCAGCACAC ACGAGCAGTG GGGCACCTGA
  AAACACTCCT TCCTGATCTC TGGACCTCAC ATCCCAGGGG ATGCCCCGCT CTCCCATGGA
  ACCTCTCTTG TCAACTTTCC ACCTGGGTTC CTAGACAACC AGAGGTCAGA GTCTGGAAAA
  R
  ACTTCCCCTC CCTCCCAATC CCGAGACAAG GTGTACAGCA CCACGGATAT TTAAGGCAGA
  GGTCAGAGCC AGATAAAGAA CTTGTTGGCT CCTGGAATGG GTGGGAGGCA GAACTGAACA
  AAGCCATAGG CCAGTTTTTC CCACTAAGCC CCAGCTTGCT CGCTCTCTCT CTCTCTCCCT
  CTCTCTCTTT AACTTCAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384822740	MGP_WTSI_11_115022800	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259306349					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384822740	MGP_WTSI_11_115022800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115052312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	1434 bp proximal
Gm72084	predicted gene, 72084	759 bp downstream
Nherf1	NHERF family PDZ scaffold protein 1	1855 bp upstream
Rab37	RAB37, member RAS oncogene family	within coordinates
Rr369433	regulatory region 369433	1357 bp upstream
Rr403111	regulatory region 403111	1576 bp upstream
Rr459780	regulatory region 459780	1272 bp distal
Rr459781	regulatory region 459781	406 bp distal
Rr459782	regulatory region 459782	8 bp distal
Rr459783	regulatory region 459783	1365 bp proximal
Tssr3727	transcription start site region 3727	1870 bp upstream
Tssr105840	transcription start site region 105840	1847 bp upstream
Tssr105841	transcription start site region 105841	1888 bp upstream
Tssr105842	transcription start site region 105842	1914 bp upstream
Tssr105843	transcription start site region 105843	1931 bp upstream
Tssr105844	transcription start site region 105844	1952 bp upstream
Tssr111730	transcription start site region 111730	1643 bp downstream