rs259309377 SNP Detail

Summary

• ID
  rs259309377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109737882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAGTTT ACATGTTTTT
  CCAACATCAC AGAACCACTA AGCACAGCAG CATCTCCATC TTTCCTATTT AGCACACCAG
  CAGTAAAACT TTACAAAGCA GATGTAATTA ATTTCCACAG AGAACCATTT ACATTGAGAG
  TAATTTGGTC AGGAAATACC CTCAAAGCTG AAGTCTTTTA TAGAGACGGT ATCTTTATGG
  Y
  GACTTTTTTT TCACAACAGC TGTAGATCAT GGCATTTTGA TAGCATTTTA ATTTTTTTTT
  GATGTTGTGT TTCTTTGGAG TGCTCTTGTT TTAAGCAAGC TAATTAATCA CTCTTGAAGA
  ATAAATCCCT CTTATTACAT TGGATTTCAG GTTTCTGACA TTAATTAAAG CAAGTCAGCA
  GGTTGAAGAA GTTCATGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458381	CHEV_10_109339077	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259309377					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109737882 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr224236	regulatory region 224236	1718 bp proximal
Tssr99236	transcription start site region 99236	1793 bp downstream
Tssr99237	transcription start site region 99237	1809 bp downstream
Tssr99238	transcription start site region 99238	1831 bp downstream
Tssr99239	transcription start site region 99239	1854 bp downstream
Tssr99240	transcription start site region 99240	1890 bp downstream
Tssr99241	transcription start site region 99241	1931 bp downstream
Tssr99242	transcription start site region 99242	1991 bp downstream