rs259311621 SNP Detail

Summary

• ID
  rs259311621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96319081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCGACTG ATTTTTCAGG
  ACTGAATTAC ATATTGGTCC TAAAGGGCAG ATGAGGAATT TGAAGGGCCC TCCGGGAGGT
  ATTTCCCTGA GGAGACTGGA GACAGAGGTG CATGCCAAAC ACCCACATTC CATCAGTCTC
  CAGCTGAAAA AATTAATTGC CTGCCCTTTA TGCCATTTGT CTTCGGCATG TGAACTGCAG
  Y
  CTCAGAGTGG GAGGGGAGGA GAGAACGGCA GGCAGCTTAG AGCGGGGGTT CAACCACGCT
  GATCTCTTGG CTGCTCCTTT AACTCCTGTG GTGACGGATC GGATCGGAGC ATTAGTCTCT
  GGCATCAAAA CAGTCTCTCG GTCCATGTGA CCAGCACTGC CGTTGCCGCA CTGTAAAGCC
  CACAAGAATC GGCAGCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323108975	CHEV_9_96337447	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259311621					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96319081 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	within coordinates
Cpgi22164	CpG island 22164	475 bp proximal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	652 bp upstream
Rr368835	regulatory region 368835	968 bp upstream
Rr684963	regulatory region 684963	162 bp proximal
Rr684964	regulatory region 684964	663 bp proximal
Rr684965	regulatory region 684965	789 bp proximal
Tssr90963	transcription start site region 90963	1133 bp downstream