rs259312261 SNP Detail

Summary

• ID
  rs259312261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53215655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGTTTCT AAGGACCCGC
  CCACCGGTGC TAGTTTCCCA AAAACCCGTG CGGCAGACTC CAGCCGCTCC AAGATGGCGA
  CTCCCATGCA TCGGCTCATA GCTCGAAGGA AAGCGTAAGT GAGATGCTTG TGGGGTGTGC
  AGGAGGGCTG GGGGCGTGCA GACGCCTGTC CGCTAGCTAG TGAGCGGGCG CAGGCTGCTG
  R
  ACTGAGCGGG ATTTGAAGAG AGTTCGAAAT GAATCCAAGA ATTGGTCGTT GGGTGGTCTG
  TGTTCCTCTG TCCGGTCCAC ATGTCAAGGG TAGCCTGGAT GCTTGATCCC ACATCTTCCC
  TCTCAAGATC CCAAACTTTT CCCTCTTCAG CGTACCTGCC TCCTTCCTAT CGCCCTTTCT
  AGAAACAAGC CTGTCTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672286	CHEV_11_53138330	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259312261					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53215655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	within coordinates
Gm74485	predicted gene, 74485	183 bp upstream
Tssr101382	transcription start site region 101382	124 bp downstream
Tssr107917	transcription start site region 107917	216 bp upstream
Zcchc10	zinc finger, CCHC domain containing 10	within coordinates