rs259314239 SNP Detail

Summary

• ID
  rs259314239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166082081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACG GATAACTTTA AATGTATTCC
  Y
  ACAGTGGTGG TGTTCCACTC CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087514	CHEV_1_168184643	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259314239					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166082081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	within coordinates
Ildr2	immunoglobulin-like domain containing receptor 2	within coordinates
Rr422555	regulatory region 422555	309 bp distal
Rr422556	regulatory region 422556	379 bp distal
Rr422557	regulatory region 422557	within coordinates
Rr422558	regulatory region 422558	1082 bp proximal
Tssr9868	transcription start site region 9868	422 bp downstream
Tssr9869	transcription start site region 9869	356 bp downstream
Tssr9870	transcription start site region 9870	342 bp downstream
Tssr9871	transcription start site region 9871	263 bp downstream