rs259320730 SNP Detail

Summary

• ID
  rs259320730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:22715134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTTTGAG AAGACTCAGA
  TCTTTCATCT GCAGCCCATC GTCAGAACTC AATCCTTCCA ATTGCCCAGG GCCACACGTA
  GTCCGTGTGG ATTTGTGTTC TCTCAAACTG TGCCAGACCA TAGCTTCTCC TCTCCATCCC
  TCCCACCCTC CCTCTTACCT TCCTTCCTCC TCTCCTTTGC TCCCTCCCTC CCTCTCCCTC
  Y
  TCCTCTCTGT CACTTCCTCC CTCTATCCCA CCTCTCCTTC CCCCCTCCCT CCCTCTGTCC
  CACCTCTTCT TGCCCCTCTT GTTCCAGACC ATCTTTCCCA CGTGTTCTCA TTTTCATTCT
  CAGCCTCTCC CAGTGTCTAC TCTGGTGGAG TTTGTAATAG CTGCCACTGA CTGTACTGCA
  AAAGAAGTCA CAGATCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628399	MGP_WTSI_16_22896457	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259320730					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628399	MGP_WTSI_16_22896457	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22715134 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahsg	alpha-2-HS-glycoprotein			Intron
				Noncoding-Transcript-Variant
Gm30505	predicted gene, 30505			1998 bp upstream
Rr513337	regulatory region 513337			1588 bp distal
Tssr4819	transcription start site region 4819			1043 bp downstream
Tssr4820	transcription start site region 4820			427 bp downstream
Tssr137565	transcription start site region 137565			1976 bp downstream
Tssr137566	transcription start site region 137566			1967 bp downstream
Tssr137567	transcription start site region 137567			1599 bp downstream
Tssr137568	transcription start site region 137568			1568 bp downstream
Tssr137569	transcription start site region 137569			1547 bp downstream
Tssr137570	transcription start site region 137570			1530 bp downstream
Tssr137571	transcription start site region 137571			1192 bp downstream
Tssr137572	transcription start site region 137572			1093 bp downstream
Tssr137573	transcription start site region 137573			1083 bp downstream
Tssr137574	transcription start site region 137574			1064 bp downstream
Tssr137575	transcription start site region 137575			1054 bp downstream
Tssr137576	transcription start site region 137576			369 bp downstream
Tssr137577	transcription start site region 137577			38 bp upstream
Tssr137578	transcription start site region 137578			109 bp upstream
Tssr137579	transcription start site region 137579			1731 bp upstream
Tssr137580	transcription start site region 137580			1781 bp upstream
Tssr140504	transcription start site region 140504			1992 bp upstream
Tssr140505	transcription start site region 140505			1943 bp upstream
Tssr140506	transcription start site region 140506			1523 bp upstream
Tssr140507	transcription start site region 140507			1160 bp upstream
Tssr140508	transcription start site region 140508			1118 bp upstream
Tssr140509	transcription start site region 140509			1100 bp upstream
Tssr140510	transcription start site region 140510			1052 bp upstream
Tssr140511	transcription start site region 140511			1038 bp upstream
Tssr140512	transcription start site region 140512			173 bp downstream
Tssr140513	transcription start site region 140513			184 bp downstream
Tssr140514	transcription start site region 140514			217 bp downstream
Tssr140515	transcription start site region 140515			1792 bp downstream
Tssr140516	transcription start site region 140516			1811 bp downstream