rs259322240 SNP Detail

Summary

• ID
  rs259322240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127187617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCCCCG GTGACCGTTG
  TTAAGGAAAG TAGAAAGTAC AAGCCCACGC CAATCATTGA AAAGATAGAG CGCATGCGTA
  ACGAGTTGCA CGTGCCTCTT AGAAGTTGCT TGTAAGGGTG CTTTTGAGGG TCGGTCTTTT
  TAAAGATTTA ATTTAAATCT TTAAAAGATT GTGTTTGTGC GTGCGTGTGC GCACATATGT
  R
  CAGGATGTTC GGGAGGGCTC CGCGGAGGCC AGGAGAGGAT GACGGATCCT CTGGATCTGG
  AGTTACAAGG GGTCGTGTAC CGAGTACCCC GAACAGCAGC AAAGGCTCCA CCCCTCCATC
  TCCTAGTGCA ACTGCGGGGT CAGTAACTAT GGGAACCGCC TGCTGGCCAA TCATTAAGAG
  AAATACAGTC CGTCGCGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373090046	MGP_WTSI_7_134731959	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259322240					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373090046	MGP_WTSI_7_134731959	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127187617 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	within coordinates
Cpgi19755	CpG island 19755	within coordinates
Gm44759	predicted gene 44759	1971 bp downstream
Rnf40	ring finger protein 40	319 bp upstream
Rr400653	regulatory region 400653	within coordinates
Rr655845	regulatory region 655845	140 bp proximal
Tssr69263	transcription start site region 69263	269 bp upstream
Tssr69264	transcription start site region 69264	294 bp upstream
Tssr75012	transcription start site region 75012	303 bp upstream
Tssr75013	transcription start site region 75013	255 bp upstream
Tssr75014	transcription start site region 75014	227 bp upstream
Tssr75015	transcription start site region 75015	195 bp upstream
Tssr75016	transcription start site region 75016	167 bp upstream