rs259322980 SNP Detail

Summary

• ID
  rs259322980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58277157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttttctgat ggtcATGATC CACAGGTTGA
  GAACCACTGA TTCAGAAGAA Gaaacaaaac aaaacaaaac aaaaaaaaac aaaacaaaCA
  ATGTGGGCAG AGATGGTGAG GTTCCTCATC ATAAGCACAG GCAGTTAGGG GTAAGGCTTG
  Y
  TCTCAATGTG ATTTAAACAT TTTTTTTTCT CTATCCCAAT ATGAAAATGG ACCATTTTCA
  TCTGCTCAGA ACAAGTCTTA ATGGCAATCA GACACCTGCT GGCTAAGGCT TCAAACAGTC
  AGCTGATGTT AACATTGACT ACAGCTTGTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690053	CHEV_11_58199833	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259322980					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58277157 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101735	transcription start site region 101735	1711 bp downstream
Tssr101736	transcription start site region 101736	1643 bp downstream
Tssr101737	transcription start site region 101737	1603 bp downstream
Tssr101738	transcription start site region 101738	1585 bp downstream
Tssr101739	transcription start site region 101739	392 bp upstream
Tssr101740	transcription start site region 101740	456 bp upstream
Tssr101741	transcription start site region 101741	484 bp upstream
Tssr108157	transcription start site region 108157	439 bp downstream
Tssr108158	transcription start site region 108158	491 bp downstream