rs259328409 SNP Detail

Summary

• ID
  rs259328409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:45351254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCTCGC TTTTTCCCTA
  AGAAGCAGTA AGCACAGGGG CAGCAGGGGC AGCAGTGGTG GCAGTGCAGA CCCTACCTGG
  ACCAGCGTGC TTTCTGACCT GGCAGCGAAA AGGTGCGTGG GGCTCCTCCT CCAGCTGCTC
  CCACTCCCCC AGTGAGCACG CAGCCCCAAG CCTGAACAAA ACTGAAACCA CAGTCTCTGC
  Y
  TGAAACAGAG CCTCCTCTTC AACCCACAGC TCCTTCCCCT CTGCCCTATC TTTTATCCCC
  ACTGGGACCG CTGGCACAGC TAGAAGATGG GGATCTGGAG CCAACGAGCC CAGAGTCCCC
  CAGCAGATGG AGCTCCTGAC ACCACTTCGG TTTTTCTTTT CGAGCTGTGG GCAATCTGCC
  CACAGACCTG CAATCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325607266	CHEV_18_45377841	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259328409					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:45351254 () rs orientation: forward

Symbol	Name	Function Class
Rr393647	regulatory region 393647	1799 bp upstream