rs259328785 SNP Detail

Summary

• ID
  rs259328785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106362912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTCCTCA ACCCCCACGG
  CCCCAGCCCC GCGCGCTTAC TTCAGCTCCC CGTCGTCCTC CCGCCCTTCG CAGCTTGGAG
  GGAAAATGAG CGAGCTAAGG AAATCAGGGC AACTAGGCGG AGACCCGATC GCCCAGAAGC
  CGCCAGCCTC CGCCCAGGGA AGCCCCACCC CAATGGGAAC CAGGCCGCCT CCGCGCCGCC
  R
  GCAGAGCCCA CGCGCGACCC GGCGAGGGCG CGGGAGGGCG CGTGCGGCGT GACGCCGCGC
  CTCGCGGCGC ATCCCCGTGA CGCCATCGCG CCGGCTTTTG AAAGTTGGCG CCCGGGGCCG
  CCTCCCATGC TGCCCTGCGC CAACCCCTCC CCTCACCTTT CCTCCCCCGC CCTCGTCGCC
  GCCGGCCGGC CCCCCCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375916402	MGP_WTSI_8_108160180	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259328785					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375916402	MGP_WTSI_8_108160180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106362912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20943	CpG island 20943	within coordinates
Ctcf	CCCTC-binding factor	288 bp upstream
Gm5914	predicted gene 5914	within coordinates
Gm38384	predicted gene, 38384	1409 bp downstream
Rr185893	regulatory region 185893	within coordinates
Tssr79169	transcription start site region 79169	478 bp downstream
Tssr79170	transcription start site region 79170	208 bp upstream
Tssr79171	transcription start site region 79171	229 bp upstream
Tssr79172	transcription start site region 79172	310 bp upstream
Tssr79173	transcription start site region 79173	646 bp upstream
Tssr82678	transcription start site region 82678	1408 bp upstream
Tssr82679	transcription start site region 82679	103 bp upstream
Tssr82680	transcription start site region 82680	1036 bp downstream
Tssr82681	transcription start site region 82681	1083 bp downstream
Tssr82682	transcription start site region 82682	1123 bp downstream
Tssr82683	transcription start site region 82683	1627 bp downstream