rs259333144 SNP Detail

Summary

• ID
  rs259333144
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180468675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCCGAG TCCACGTTAC
  TTTGGGCAGA GCCCCCTCCG TGCCAAGCGA CCAGGAACCC AGGTCTCGTC CGCCGCGCCA
  CCGGCCCGGG CCTGCGTCCC GCTCCCCTCG GGAACCGGCC TGCAGTTCCC GCAGCCGCAG
  CGCGGGCCGC GCGCCGGGAG CGAGCGCAGG CGAGGGGGGC GGCGCGGGCG GGCGCATCGG
  K
  GCTGGCGCCG CGCCCCCCGC GCTCGGCCCT ACCGGGCCTC TCGGCGAGGC GTCCCCTGTC
  CTCCTCCGGG CCCGGCCCGG GGTGCGGGCG AGGCCCCGAG GCCCCCTCCC GCCGGGCTCG
  GGCGGAGCCG GACGGCCTGG CGGGAGCAGG CGCCGCGGGC CGCGAGCTCC TCATTCGAAC
  CTCCCTCGCA GACAGTCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352591158	MGP_WTSI_1_182571241	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259333144					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352591158	MGP_WTSI_1_182571241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180468675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1114	CpG island 1114	within coordinates
Gm70644	predicted gene, 70644	1210 bp upstream
Lin9	lin-9 DREAM MuvB core complex component	40 bp upstream
Rr29091	regulatory region 29091	within coordinates
Tssr10481	transcription start site region 10481	404 bp downstream
Tssr10482	transcription start site region 10482	220 bp upstream