rs259338284 SNP Detail

Summary

• ID
  rs259338284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:120154237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACTCCCC ATGAGTCTAG
  ATGTCCCAGG AAGTGTAAGA CTCTAGACTC CCCATGAGTC TAGATGTCCC AGGAAGTGTA
  AGACTCTAGA CTCCCCATGA GTCTAGATGT CCCAGGAAGC GTAAGACTCT AGACTCCCCA
  TGAGTCTAGA TGTCCCATGA GTCTAGATGT CCCTATGCCC AGGATTGTGT ACCCTGACAT
  Y
  GGCAAGCAAA GTTTGGGTCT CAACAAGCTC AGAACGCCCA AGGTAAAGCA AGCACAGGGT
  GAGGGATCTG ATCCTGTCCT TTGCTGGGGA GAGGGGGGCT GTCCTCTTGA CACAGAGGCT
  GGAGGATGGT GTTGTGCATA GGAAGTAGGT CATGGAGGCC TGGAGTTGGC CCAGAGTCCT
  TGACAGCAGC AAGCAGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376245728	MGP_WTSI_8_121951398	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259338284					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376245728	MGP_WTSI_8_121951398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:120154237 () rs orientation: forward

Symbol	Name	Function Class
Gm32006	predicted gene, 32006	within coordinates
Gm64145	predicted gene, 64145	227 bp upstream
Rr401165	regulatory region 401165	590 bp upstream
Rr671126	regulatory region 671126	707 bp distal
Rr671127	regulatory region 671127	86 bp proximal
Rr671128	regulatory region 671128	238 bp proximal
Tssr79690	transcription start site region 79690	1567 bp downstream
Tssr79691	transcription start site region 79691	1540 bp downstream
Tssr83121	transcription start site region 83121	905 bp upstream
Tssr83122	transcription start site region 83122	1430 bp downstream
Tssr83123	transcription start site region 83123	1491 bp downstream