rs259339164 SNP Detail

Summary

• ID
  rs259339164
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7242764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGTGGGG CGGGGACCGC
  GCAGTCTCTT TAAGGCGCTT CCAGCTCTCC GCTCCAATCG CTGCTCTGAC CCCCTAGGCG
  GTCTCCTCCC CTCTAGTACT GCCCTCAAGG GTGCAGCTTC CCCTAGCCTG TGGGGCGGGG
  GGCCCGAAGG GTTGTCTTGT CTAGAAACGT TTCTGAGGCC ATAAAATATC CCTTCACAGT
  S
  TGGTACTTGA GAATAAAGGC GGGAGCTCCG ACATCCATCA TTCCAGCGGC TGAACCTGCC
  TCCAGCAGCT GAACGTACCC CCAACATGTC TCAGTCTCCC CCTCTAGGTC CAACTCCTGC
  TCTCCCAGAA ACGATGAAGC TCAAACTTTA CTGGGGACCA GCCTGAACCC CAGATCTAGA
  GGGACAACAG TGCTCCCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325887770	CHEV_X_6953651	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259339164					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7242764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22566	CpG island 22566	176 bp distal
Gm14379	predicted gene 14379	within coordinates
Rr4554	regulatory region 4554	637 bp proximal
Rr4556	regulatory region 4556	1637 bp proximal
Rr8710	regulatory region 8710	within coordinates
Usp27x	ubiquitin specific peptidase 27, X chromosome	695 bp upstream