rs259342301 SNP Detail

Summary

• ID
  rs259342301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78071548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCAACC GGTTGGGCAT
  GGCTAAATGG GTGAGGACAA GACACTGTCC AAAAGCCTGC CAACCCATAC TGCCCTGAAA
  TGGATGCTGA CAATTCTAAA ATAACCCCTC TGCTCTTCCA AACCCTGGTA TTGGTTTCAC
  ACCAGCCTGT AGCAGGGAAG GAATTCTTGT AAAGCTTGTC CTTTGAGCCT GTGATGGAGC
  R
  GTGTCCCAGG AGAACCAACA CCTGTCTATA ATAAATGACC CTGGTACTGA GCTAGCATGG
  GGACTGCATC ATCATGTGTC CCCATTGGGT TAAGCAAATC AAGTCTTAAT TGCTCAGAGC
  TGAGAAAGCC CTGGGTTTGA TCCCAGCACC CACCCCGCAG CATGGCCTTG TCCCCAGCCC
  AACTAGAAAG CGACAAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383952651	MGP_WTSI_11_77994224	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259342301					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383952651	MGP_WTSI_11_77994224	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78071548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3334	CpG island 3334	1321 bp distal
Mir7653	microRNA 7653	1835 bp downstream
Rpl23a	ribosomal protein L23A	213 bp downstream
Rr451900	regulatory region 451900	1950 bp distal
Rr451901	regulatory region 451901	1441 bp distal
Snord4a	small nucleolar RNA, C/D box 4A	965 bp downstream
Snord42a	small nucleolar RNA, C/D box 42A	580 bp downstream
Tlcd1	TLC domain containing 1	within coordinates
Tssr103234	transcription start site region 103234	1950 bp downstream
Tssr103235	transcription start site region 103235	1736 bp downstream
Tssr103236	transcription start site region 103236	1720 bp downstream