rs259342322 SNP Detail

Summary

• ID
  rs259342322
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104125316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAACAGA TTGGTGTTTA
  TTAAAGAGCC AACCCTCTCA TCTATTAAAC AAACCACAGT GATTTGGAAT ATAACAACTT
  CCTCAACAAC TTTATGACTG TTATTCCTTC AGTAATGCCC CAACTGATCA AAACAAAACA
  GAGCAATGAT GCACATATTC TCATTATCTG CTGGCTCATG GGATTTCATC TAAGTCAAAG
  S
  TTCTCAACCT CCCTAATGCT GTGACCCTTT AATACAGTTC CTCATGTTGT AGTGACCCCC
  AAACATAACA TTATTTCATT GCTACTTCAT AACTGTAATT TTGCTACTGC AATGAACCAT
  AATATAAATA TCTGATATGC AAGATAATTG ATACACAACC CCCAAAGGGG TTGAGACCCA
  CAGGTTGAGA ACCTATGACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320859620	CHEV_3_104021923	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259342322					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104125316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13643	CpG island 13643	1226 bp proximal
Gm66179	predicted gene, 66179	1659 bp upstream
Magi3	membrane associated guanylate kinase, WW and PDZ domain containing 3	Intron
Rr582475	regulatory region 582475	1169 bp proximal