rs259345646 SNP Detail

Summary

• ID
  rs259345646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28228106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCGCTC CGGGTCGCTG
  CGCCCACCCG ACGCGCCCAG GAGGACTCCG CAGCCCTGCT TTGGATTGTC CCCCAAGGCT
  TAACCCCGAC GCTTCGCTTG AATTCCTCGG CCGCCTTCGC TCGGGTGGCG ACTTCCTCTC
  CGTGCCCCCT CCCCCTCGCC ATGAAGGTAA GTGTTCTGTG CGCACGGACG CTCCCTACTT
  Y
  TTCCCCCCCT TTTCAAAGTT AACTGAACTC TTTCAATCTA TCCCTATCCT CTCCATTTCT
  CTAACTGCCT GGAGAAAGCT AAACTCCAAT ATCGCCGGCA GGGACTCCTA TCTTTTCGTC
  CCTTACCCTG GGGACACTGC CTCTGCGTCC TTGGAGACTT TTTGCACCGG CTATTCTTCA
  AACCTTTTCA ACTATGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390637210	MGP_WTSI_14_29319335	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259345646					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390637210	MGP_WTSI_14_29319335	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28228106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	within coordinates
Cpgi6259	CpG island 6259	1443 bp proximal
Gm2670	predicted gene 2670	1925 bp downstream
Rr489628	regulatory region 489628	1389 bp distal
Rr489629	regulatory region 489629	1071 bp distal
Rr489630	regulatory region 489630	881 bp distal
Rr489631	regulatory region 489631	1554 bp proximal
Rr489632	regulatory region 489632	1666 bp proximal
Tssr124778	transcription start site region 124778	1544 bp downstream
Tssr124779	transcription start site region 124779	1493 bp downstream
Tssr124780	transcription start site region 124780	1460 bp downstream
Tssr124781	transcription start site region 124781	1387 bp downstream
Tssr124782	transcription start site region 124782	1323 bp downstream
Tssr124783	transcription start site region 124783	658 bp downstream
Tssr124784	transcription start site region 124784	640 bp downstream
Tssr124785	transcription start site region 124785	580 bp downstream
Tssr124786	transcription start site region 124786	532 bp downstream
Tssr124787	transcription start site region 124787	377 bp downstream
Tssr124788	transcription start site region 124788	352 bp downstream
Tssr124789	transcription start site region 124789	314 bp downstream
Wnt5a	wingless-type MMTV integration site family, member 5A	within coordinates