rs259347498 SNP Detail

Summary

• ID
  rs259347498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54360923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGAAAAGG TGGACTCTGG TTAGCTCCTC
  CATAGGAGCA GGGTTGTCTA TTTAAAAAGT AGGATTTGGG GGATTTGGGA AAAAAagaaa
  gagagagaga gagagagaga gggagagaga gagagagaga gagagagaga gagagagaga
  R
  agagagagag agagagagaA ACATGCATCT CAGAAGAACC TGAGAGGATT GTACCTGCTC
  CAGAGAATCA AGTCAAACTG TAGAAATGAC AGAGTGGGAC AGCTCAGCAG AGTCAGGATG
  AATGTGTGCT CAGGTGATCC ATCCTATAGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324634972	CHEV_14_54743141	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259347498					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54360923 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292699	regulatory region 292699	1123 bp distal
Rr297183	regulatory region 297183	677 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	1225 bp downstream
Trdj1	T cell receptor delta joining 1	278 bp downstream
Tssr125529	transcription start site region 125529	1975 bp downstream
Tssr125530	transcription start site region 125530	1562 bp downstream
Tssr125531	transcription start site region 125531	1543 bp downstream
Tssr125532	transcription start site region 125532	1530 bp downstream
Tssr125533	transcription start site region 125533	1426 bp downstream
Tssr125534	transcription start site region 125534	1333 bp downstream
Tssr125535	transcription start site region 125535	1319 bp downstream
Tssr125536	transcription start site region 125536	1282 bp downstream
Tssr125537	transcription start site region 125537	1238 bp downstream
Tssr125538	transcription start site region 125538	1218 bp downstream
Tssr125539	transcription start site region 125539	307 bp downstream
Tssr128533	transcription start site region 128533	118 bp downstream
Tssr128534	transcription start site region 128534	1947 bp downstream