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rs259347498 SNP Detail
Summary
  • ID
    rs259347498
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:54360923 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      GGGAAAAGG TGGACTCTGG TTAGCTCCTC
    CATAGGAGCA GGGTTGTCTA TTTAAAAAGT AGGATTTGGG GGATTTGGGA AAAAAagaaa
    gagagagaga gagagagaga gggagagaga gagagagaga gagagagaga gagagagaga
    R
    agagagagag agagagagaA ACATGCATCT CAGAAGAACC TGAGAGGATT GTACCTGCTC
    CAGAGAATCA AGTCAAACTG TAGAAATGAC AGAGTGGGAC AGCTCAGCAG AGTCAGGATG
    AATGTGTGCT CAGGTGATCC ATCCTATAGC                                 
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss324634972 CHEV_14_54743141 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs259347498 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:54360923 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
A430107P09Rik RIKEN cDNA A430107P09 gene within coordinates
A630038E17Rik RIKEN cDNA A630038E17 gene within coordinates
Gm30275 predicted gene, 30275 within coordinates
Rr292699 regulatory region 292699 1123 bp distal
Rr297183 regulatory region 297183 677 bp proximal
Tcra T cell receptor alpha chain within coordinates
Tcrd T cell receptor delta chain within coordinates
Trdd2 T cell receptor delta diversity 2 1225 bp downstream
Trdj1 T cell receptor delta joining 1 278 bp downstream
Tssr125529 transcription start site region 125529 1975 bp downstream
Tssr125530 transcription start site region 125530 1562 bp downstream
Tssr125531 transcription start site region 125531 1543 bp downstream
Tssr125532 transcription start site region 125532 1530 bp downstream
Tssr125533 transcription start site region 125533 1426 bp downstream
Tssr125534 transcription start site region 125534 1333 bp downstream
Tssr125535 transcription start site region 125535 1319 bp downstream
Tssr125536 transcription start site region 125536 1282 bp downstream
Tssr125537 transcription start site region 125537 1238 bp downstream
Tssr125538 transcription start site region 125538 1218 bp downstream
Tssr125539 transcription start site region 125539 307 bp downstream
Tssr128533 transcription start site region 128533 118 bp downstream
Tssr128534 transcription start site region 128534 1947 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory