GGGAAAAGG TGGACTCTGG TTAGCTCCTC CATAGGAGCA GGGTTGTCTA TTTAAAAAGT AGGATTTGGG GGATTTGGGA AAAAAagaaa gagagagaga gagagagaga gggagagaga gagagagaga gagagagaga gagagagaga R agagagagag agagagagaA ACATGCATCT CAGAAGAACC TGAGAGGATT GTACCTGCTC CAGAGAATCA AGTCAAACTG TAGAAATGAC AGAGTGGGAC AGCTCAGCAG AGTCAGGATG AATGTGTGCT CAGGTGATCC ATCCTATAGC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | LG/J |
SM/J |
---|---|---|---|---|---|---|---|
ss324634972 | CHEV_14_54743141 | CHEVERUD | SCREENING_POP | f | SNP | G | A |
SNP Consensus Information | |||||||
SNP | Consensus Type | LG/J |
SM/J |
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rs259347498 | SNP | G | A |
Location: Chr14:54360923 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
A430107P09Rik | RIKEN cDNA A430107P09 gene | within coordinates | ||||||
A630038E17Rik | RIKEN cDNA A630038E17 gene | within coordinates | ||||||
Gm30275 | predicted gene, 30275 | within coordinates | ||||||
Rr292699 | regulatory region 292699 | 1123 bp distal | ||||||
Rr297183 | regulatory region 297183 | 677 bp proximal | ||||||
Tcra | T cell receptor alpha chain | within coordinates | ||||||
Tcrd | T cell receptor delta chain | within coordinates | ||||||
Trdd2 | T cell receptor delta diversity 2 | 1225 bp downstream | ||||||
Trdj1 | T cell receptor delta joining 1 | 278 bp downstream | ||||||
Tssr125529 | transcription start site region 125529 | 1975 bp downstream | ||||||
Tssr125530 | transcription start site region 125530 | 1562 bp downstream | ||||||
Tssr125531 | transcription start site region 125531 | 1543 bp downstream | ||||||
Tssr125532 | transcription start site region 125532 | 1530 bp downstream | ||||||
Tssr125533 | transcription start site region 125533 | 1426 bp downstream | ||||||
Tssr125534 | transcription start site region 125534 | 1333 bp downstream | ||||||
Tssr125535 | transcription start site region 125535 | 1319 bp downstream | ||||||
Tssr125536 | transcription start site region 125536 | 1282 bp downstream | ||||||
Tssr125537 | transcription start site region 125537 | 1238 bp downstream | ||||||
Tssr125538 | transcription start site region 125538 | 1218 bp downstream | ||||||
Tssr125539 | transcription start site region 125539 | 307 bp downstream | ||||||
Tssr128533 | transcription start site region 128533 | 118 bp downstream | ||||||
Tssr128534 | transcription start site region 128534 | 1947 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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