rs259350180 SNP Detail

Summary

• ID
  rs259350180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46449608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCATACC TGCCACCAAC
  AGCACATGAC ACCACCTGTG GGCTACCTGT TCTCATAGGG CCCTCAACTG TTTTCCATCC
  AGTGTACCAA AGTAAGAGTC CCCAACGGTG ACTCACTCTA GACCAGGGTG GAGCAAAAAT
  ATGGCAGATT TGAACCAGAC CTATAAAGCT TAACTTTGTT GGGCTACTGG TGATGATTAA
  R
  CCTTAATTCC TCATTTTTTT TCAATTAAGA TATCACCAAC TTCATAGGGG TTGCCTGAAA
  GTTAAATGGG ACATAACAGC GCAAGCTCTT AAAAGCCAAT GCTCGGTGAT TGATTATGGA
  AGCGCTTCAG TAGATTTTTT TTTTTTTTTT TTGAAAAGCT TTTTGCATAG CTCAGTGAAG
  CCTATCAGGT AATAGTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361391764	MGP_WTSI_4_46462480	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259350180					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361391764	MGP_WTSI_4_46462480	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46449608 () rs orientation: forward

Symbol	Name	Function Class
Anp32b	acidic nuclear phosphoprotein 32 family member B	1318 bp upstream
Cpgi14257	CpG island 14257	846 bp proximal
Gm69233	predicted gene, 69233	795 bp downstream
Tssr37119	transcription start site region 37119	1263 bp upstream
Tssr37120	transcription start site region 37120	1284 bp upstream
Tssr37121	transcription start site region 37121	1304 bp upstream
Tssr37122	transcription start site region 37122	1436 bp upstream
Tssr37123	transcription start site region 37123	1472 bp upstream
Tssr37124	transcription start site region 37124	1510 bp upstream
Tssr37125	transcription start site region 37125	1538 bp upstream
Tssr41577	transcription start site region 41577	1857 bp downstream