rs259352295 SNP Detail

Summary

• ID
  rs259352295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142264817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT GTACCTTTCA CTCACTTGTC
  R
  GTCCAGTAGG GAGATATAGT TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002875	CHEV_3_142222020	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259352295					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142264817 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	970 bp upstream
Rr398085	regulatory region 398085	1254 bp upstream
Rr586453	regulatory region 586453	528 bp proximal
Rr586454	regulatory region 586454	1366 bp proximal
Rr586455	regulatory region 586455	1773 bp proximal
Tssr32157	transcription start site region 32157	1008 bp upstream
Tssr32158	transcription start site region 32158	1052 bp upstream
Tssr32159	transcription start site region 32159	1098 bp upstream
Tssr32160	transcription start site region 32160	1137 bp upstream
Tssr32161	transcription start site region 32161	1295 bp upstream
Tssr32162	transcription start site region 32162	1482 bp upstream
Tssr32163	transcription start site region 32163	1516 bp upstream
Tssr32164	transcription start site region 32164	1549 bp upstream
Tssr32165	transcription start site region 32165	1565 bp upstream
Tssr32166	transcription start site region 32166	1901 bp upstream