rs259352893 SNP Detail

Summary

• ID
  rs259352893
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85531097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGCACAC ACACTTGTGT
  CATGGTGATA TGGAGGGCAA CTTTTGGGAG TCAGTCTTCT TTTTCCATTT CTACATGGCT
  TCTAAGGGAC CAAACTCAAG TCACCAGCAT TGATCTACAA GAGCTTTACT GGCTGAGCAG
  TCATCATCCT AAAAAAAAAT AAAGATGTAT TATTTACGTA TATAGGTACT TTGTCTGCAT
  K
  TCCATCTGCC CAGCAGAAGG TGGCATCAGA CAAGCCTGAG CTGTCATGTG GATGCTGGGA
  CTTGAACTCA GGACCTTCAG AAGAGCAGTG TGTTCTTGAC CATTGAGCCC CCAGCTGAAC
  TATCTTGCTG GCCCCTTTAA ACCAATTTTG TTTGTTTGTT GACAAAGGGT CTTATCATTT
  AATCTTGGCT GGTCTGGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386736532	MGP_WTSI_12_86825273	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259352893					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386736532	MGP_WTSI_12_86825273	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85531097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4899	CpG island 4899	1492 bp proximal
Gm56541	predicted gene, 56541	within coordinates
Gm60138	predicted gene, 60138	1155 bp upstream
Rr469910	regulatory region 469910	909 bp distal
Rr469911	regulatory region 469911	1056 bp proximal
Rr469912	regulatory region 469912	1689 bp proximal
Tssr114406	transcription start site region 114406	1906 bp upstream
Tssr114407	transcription start site region 114407	1948 bp upstream
Tssr117091	transcription start site region 117091	1468 bp downstream
Tssr117092	transcription start site region 117092	1605 bp downstream
Tssr117093	transcription start site region 117093	1632 bp downstream
Tssr117094	transcription start site region 117094	1657 bp downstream