rs259355006 SNP Detail

Summary

• ID
  rs259355006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45211750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATCTGG CTGGGCTATC
  AGGTGTCTCG GAGCAACAGC GCCCTCCGAG CCTCGGGCAA CTCTCCGAGG GGTCTGTCCT
  CACTCCCCTG CCCTTTCCAG CGGGGGGCGA CCCGCGTCCG CGCGTGTCCC CACTCATGCC
  CAAACAAGGA AGCGCGGGAG CGGGCGCGCG CACGCGGTGG GCCAGGCAGC GGGTCTGCGG
  R
  GAGCGGGGCT CCGCCCGCGG GGGCGACCTC GGGCGGCGCG TGCGCCGTGC GCCCCAGCCG
  GCCGCCGGGA TGCCTATTTT AGTCAAAGCC TCCGCGAACG GGGAGCGGGC CGGGGCCGCG
  CTGCCTGGGG ACCCGCCGCG AGCCCGTCCA GCCACCGCCG CTCGCCGCCG CCGCCGCCGT
  CGCAAACTTT GCGCGCGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380236859	MGP_WTSI_10_45055460	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259355006					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380236859	MGP_WTSI_10_45055460	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45211750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1517	CpG island 1517	within coordinates
Popdc1	popeye domain cAMP effector 1	118 bp upstream
Rr431084	regulatory region 431084	within coordinates
Rr431085	regulatory region 431085	20 bp proximal
Rr431086	regulatory region 431086	129 bp proximal
Tssr93188	transcription start site region 93188	69 bp upstream
Tssr93189	transcription start site region 93189	97 bp upstream
Tssr93190	transcription start site region 93190	232 bp upstream
Tssr93191	transcription start site region 93191	251 bp upstream
Tssr93192	transcription start site region 93192	650 bp upstream