rs259375011 SNP Detail

Summary

• ID
  rs259375011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72537146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGCTGG TTCTCCAAGA
  CTAGATGGGG AGTTGTAGAA GGTCCATTCT CTGCACCAGC CTCTTAACTG CCTGGATCTC
  CTGTCTCCCT TTATAAAGGG GCACAGGGTA GAGAGCAGAA TAAGACCTAG ATTCACTTTT
  GGGTCTCATG TACTCATCCA GGCCTCAGTG GAACAGTGTC TGCTTCGTGT TTGTGGTTGG
  R
  AAAGGGGAGT CTCCTTCCCT GACTTAGCTT CCAAACACAT GAGCAAACTA GGTCTTTCCC
  AACCTTACTC TGGACCTCAA TTTTATTTAT GTTTTGTTTT GTTTTTTATT TATTTATTTA
  TTTGTTTGTT TGTTTGTTTG TTTGTTTGTT TGTTTGTTTG TTTAAGCTCA GATCCATTCA
  TAATGGTAGA AAGCACGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771570	MGP_WTSI_X_70738879	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259375011					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771570	MGP_WTSI_X_70738879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72537146 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	within coordinates
Rr6090	regulatory region 6090	146 bp distal
Rr7747	regulatory region 7747	1427 bp proximal
Rr10758	regulatory region 10758	11 bp proximal
Tssr5633	transcription start site region 5633	263 bp downstream
Tssr5634	transcription start site region 5634	1157 bp downstream
Tssr5635	transcription start site region 5635	1512 bp downstream
Tssr161215	transcription start site region 161215	1536 bp downstream
Tssr161216	transcription start site region 161216	1518 bp downstream
Tssr161217	transcription start site region 161217	1479 bp downstream
Tssr161218	transcription start site region 161218	1466 bp downstream
Tssr161219	transcription start site region 161219	1405 bp downstream
Tssr161220	transcription start site region 161220	802 bp downstream
Tssr161221	transcription start site region 161221	743 bp downstream
Tssr161222	transcription start site region 161222	728 bp downstream
Tssr161223	transcription start site region 161223	558 bp downstream
Tssr161224	transcription start site region 161224	504 bp downstream
Tssr161225	transcription start site region 161225	326 bp downstream
Tssr161226	transcription start site region 161226	275 bp downstream
Tssr161227	transcription start site region 161227	225 bp downstream
Tssr161228	transcription start site region 161228	1058 bp upstream
Tssr161229	transcription start site region 161229	1091 bp upstream
Tssr161230	transcription start site region 161230	1115 bp upstream
Tssr161231	transcription start site region 161231	1132 bp upstream
Tssr161232	transcription start site region 161232	1183 bp upstream
Tssr161233	transcription start site region 161233	1255 bp upstream
Tssr161234	transcription start site region 161234	1275 bp upstream
Tssr161235	transcription start site region 161235	1340 bp upstream
Tssr161236	transcription start site region 161236	1383 bp upstream
Tssr161237	transcription start site region 161237	1437 bp upstream
Tssr161238	transcription start site region 161238	1473 bp upstream
Tssr161239	transcription start site region 161239	1522 bp upstream
Tssr161240	transcription start site region 161240	1536 bp upstream
Tssr161241	transcription start site region 161241	1572 bp upstream
Tssr161242	transcription start site region 161242	1605 bp upstream
Tssr161243	transcription start site region 161243	1769 bp upstream
Tssr161244	transcription start site region 161244	1793 bp upstream
Tssr161245	transcription start site region 161245	1888 bp upstream
Tssr163545	transcription start site region 163545	1477 bp upstream
Tssr163546	transcription start site region 163546	1413 bp upstream
Tssr163547	transcription start site region 163547	1078 bp downstream
Tssr163548	transcription start site region 163548	1184 bp downstream
Tssr163549	transcription start site region 163549	1261 bp downstream
Tssr163550	transcription start site region 163550	1316 bp downstream
Tssr163551	transcription start site region 163551	1401 bp downstream
Tssr163552	transcription start site region 163552	1527 bp downstream
Tssr163553	transcription start site region 163553	1613 bp downstream
Tssr163554	transcription start site region 163554	1632 bp downstream
Tssr163555	transcription start site region 163555	1659 bp downstream