rs259377937 SNP Detail

Summary

• ID
  rs259377937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52650026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA CCTTCTTCAT CTAACATAAA
  R
  GGCTTCTTCT TCTTCTTTTT CTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	CAST/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ
ss641861129	FVB_NJ_8_53282345	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	A	A	A	A	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	CAST/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ
rs259377937					SNP	A	G	G	G	G	G	G	A	A	A	A	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641861129	FVB_NJ_8_53282345	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52650026 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	within coordinates
Gm64848	predicted gene, 64848	9 bp downstream
Rr663484	regulatory region 663484	66 bp proximal
Tssr81291	transcription start site region 81291	93 bp upstream
Tssr81292	transcription start site region 81292	48 bp downstream
Tssr81293	transcription start site region 81293	143 bp downstream
Tssr81294	transcription start site region 81294	157 bp downstream