rs259378349 SNP Detail

Summary

• ID
  rs259378349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:68719085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTAAGAAA GAACAGTGGC AAGAACCCAT CTGCACAGGG
  CTTGCTTGTG GCTGTGTGTG TACGTGTGGT TTGTGTGTGT ATGTGTGGTT TGTGTGTGTA
  Y
  GTGTGGTTTG TGTGTGTGTA CGCACAGGCA CGGCATATGG CTGAGCTGCA GCATCTACGC
  AGCCAGCACA CAGGATGTTG GGCATGTCCG CCATCTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324395788	CHEV_13_68709843	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259378349					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:68719085 () rs orientation: forward

Symbol	Name	Function Class
Mtrr	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	within coordinates
Rr1653	regulatory region 1653	562 bp upstream
Rr388642	regulatory region 388642	1832 bp downstream
Rr482077	regulatory region 482077	1165 bp distal
Rr482078	regulatory region 482078	1873 bp proximal
Tg(Tek-cre)12Flv	transgene insertion 12, Richard A Flavell	within coordinates