rs259380846 SNP Detail

Summary

• ID
  rs259380846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115818184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTCTAG GGCCTCACCC
  GATCCCTGTC ATCTTCAAAC CACAAACAGC AAACAAAATG AGAAACCGAC TCCAGGTCTT
  CCCTGAAGTG GAGACCAACG GTGAGTCAAA GCTGGATCTG ACAGGGTCTG ACAGGGCTCC
  GGTGGGTGTG TGGGCGGACT TCCGGCTCTC AGGGAGGTTG TTAGAAAGGC ACTTTAAAAC
  R
  CTTAAGCCAT TTCCAGATTT CCAACAGGCA GCTCGCGTGG CGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTTGGGGGG GTTACTATTG CTGTGATGAA
  ACACCATGAC CAAATGCAAT GGTTTATTTG GCTAACGTTT CCACATCACT GTTCATCATT
  GAAGGAGTCA GCACAGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320893976	CHEV_3_115727453	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259380846					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115818184 () rs orientation: forward

Symbol	Name	Function Class
Extl2	exostosin-like glycosyltransferase 2	Intron
Rr583641	regulatory region 583641	1275 bp proximal