rs259391263 SNP Detail

Summary

• ID
  rs259391263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCTAAG TACACTGTAG
  CTGTCTTCAG ACACACCAGT AGAGGGTGTC AGATCTCATT ACGGATGGTT GTGAGCCACC
  ATGTGGTTGC TGGGACTTGA ACTCAGGACC TTCGGAAGAG CAATCAATGC TCTTAACCAC
  CGAGCCATCT CTCCAGCCCG GCAAGATCTC TCTTGTTCAC TGTTATATAT GTCAGGCAAG
  Y
  AGTCTCAAAC TTCTATAGAG TCTCCTGTGT GTGCCTCCAT CCTGCTGTAA GAACGCTGGG
  ATTACAGATA TGTACCATAG CACCTCATGC TTATGTGGTT AAGAGCTCTA CCCTTTGAGT
  CATCTCCCCT CATTCATCAA ATGCCACTTG AACTACATGT CCTCTGGAGG TGCTCCTGAC
  TCCTAATTCT TACTCTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355716117	MGP_WTSI_2_132639895	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	C	C	C	T	T	T	T	C	C	C	C	C	C	C	C	T	T	T	C	C	C	T	T	T	T	T	T	T	T	C	T	C	C	C	T	T	C	T	T	T	C	C	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259391263					SNP	T	T	T	C	T	C	C	C	T	T	T	T	C	C	C	C	C	C	C	C	T	T	T	C	C	C	T	T	T	T	T	T	T	T	C	T	C	C	C	T	T	C	T	T	T	C	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355716117	MGP_WTSI_2_132639895	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	1467 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1982 bp upstream
Rr397334	regulatory region 397334	1779 bp upstream
Rr565537	regulatory region 565537	1885 bp proximal
Rr565538	regulatory region 565538	1993 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1978 bp upstream
Tssr20336	transcription start site region 20336	1989 bp upstream
Tssr26490	transcription start site region 26490	1819 bp downstream