rs259392823 SNP Detail

Summary

• ID
  rs259392823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89302982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTACTGTT AGTTCCTTAG
  TGGCTCTTTT CCATTTCATG TTTCCATGTT TGCTTTTCCT TGTGGTACAA ATAGTTATTA
  GTTCCCTTTC ATGTTGGGGG AACACGGACT TGAAATTTCT GTCTAAATCC CCTCCCCCGC
  TTTGGGTCGT AACTGCCAAA CCAGAGACCG AGGCCAAGAA GCGCTGGTGG AACCCCGCCC
  Y
  CTTATTGGGA ATCTGGCGTC TCCCCTGACC CCCATATCAA TCCCATATAC ACCTGAGCTG
  CTATAGAACT GGAAGGCAAG TGTGGGGTGT GCAGGGGCTT CCTGGTGAGC GTCCCCCATC
  CTCACATTCA GACTTACATC TTCAGGCAAC TTTCTAGATT CTAGACTTTA ATGCACGAGA
  GAAGTAGGTG AGTAAATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358811639	MGP_WTSI_3_89199597	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259392823					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358811639	MGP_WTSI_3_89199597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89302982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13429	CpG island 13429	959 bp distal
Cpgi13430	CpG island 13430	364 bp proximal
Gm15417	predicted gene 15417	within coordinates
Rr381	regulatory region 381	472 bp proximal
Rr397788	regulatory region 397788	1809 bp downstream
Rr580073	regulatory region 580073	1398 bp distal
Rr580074	regulatory region 580074	953 bp distal
Rr580075	regulatory region 580075	within coordinates
Rr580076	regulatory region 580076	47 bp proximal
Rr580077	regulatory region 580077	274 bp proximal
Rr580078	regulatory region 580078	892 bp proximal
Tssr30100	transcription start site region 30100	1811 bp downstream
Tssr30101	transcription start site region 30101	1354 bp downstream
Tssr30102	transcription start site region 30102	34 bp upstream
Tssr34135	transcription start site region 34135	1991 bp upstream