rs259394880 SNP Detail

Summary

• ID
  rs259394880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:38299894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAACCGA CAGCAGGGCC
  GGGCCTCGTT CCCGCCCCTG GCGGAGGCCG GGGCTGGGTC ACTCGGGGAC GAGAAGCTCC
  CCGGGTGCAC CCGTTCGCCG CCCATCCCTG GCCTCCGCCT CGGCTGCGGG AGGTGGGGCC
  GGGTCCCCGC GGAAGCCCGA CCGCCGCCCT CCTCCTGCTC GCCGCCTCCG GGGAGCGGCC
  R
  GAGCCTGGGG CACTCCGCCC ACTCGGCCCG CGGGACCTCA GCCTACCCGC ATCTGCAGCA
  TTCGTCCGAC TGCTGTTTCC GGCAGCCTGA GCCCCCGCAA GCAGTCTCTG CAGGCTCCCA
  GACGTGCGGC GCCCACAGCA CGGGCTCCAG GCGCGCGGCC CCACGGTTCC CGCCTCGACA
  CGCGGCCCCC GCGTCTCGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393693050	MGP_WTSI_15_38229405	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259394880					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393693050	MGP_WTSI_15_38229405	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:38299894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7049	CpG island 7049	within coordinates
Gm35248	predicted gene, 35248	within coordinates
Klf10	Kruppel-like transcription factor 10	Intron
Rr501355	regulatory region 501355	644 bp distal
Rr501356	regulatory region 501356	78 bp distal
Rr501357	regulatory region 501357	1016 bp proximal
Rr501358	regulatory region 501358	1046 bp proximal
Rr501359	regulatory region 501359	1376 bp proximal
Rr501360	regulatory region 501360	1904 bp proximal
Rr501361	regulatory region 501361	1912 bp proximal
Tssr4579	transcription start site region 4579	635 bp upstream
Tssr131113	transcription start site region 131113	284 bp downstream
Tssr131114	transcription start site region 131114	136 bp downstream
Tssr131115	transcription start site region 131115	742 bp upstream
Tssr131116	transcription start site region 131116	1542 bp upstream
Tssr134124	transcription start site region 134124	40 bp downstream
Tssr134125	transcription start site region 134125	1010 bp downstream
Tssr134126	transcription start site region 134126	1043 bp downstream