rs259396975 SNP Detail

Summary

• ID
  rs259396975
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150696181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGAAAA GTATCTGCAA
  GGGTGAAAGG CTGGATGGAG CTACTAGGCT GGGATGGGCA CTTGTGACTG CTATCTGGCT
  ACATCTCATT CCATCTATGT GAGTAATAGA ACTAACTGCC TTGTCCCAGG GGTGGTACCG
  ACAAACAGGG CTCGGCAGGT TATCTGGGTT TTATCAATTC CAATTATTTT ATAAGGTCAA
  S
  CAGAGGCTTC TATGGGAGAT AAAGAGGTAA GAATGAACAT TATGAGGGGT TTAACAAGGA
  CTGCTCAGGG AAGAATGAAG GAGGCTAGTG TTTAATAGAG CTAAACCATT TTCCAAGAAA
  GTTTGAGTTT CTCTCCTGTC TCTGCCACTG AACCAAGACT TTCCTTTTGC TAGGAGACAT
  GTTCCTAACC CTTGAGATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356125110	MGP_WTSI_2_150679997	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259396975					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356125110	MGP_WTSI_2_150679997	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150696181 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Gm75588	predicted gene, 75588	1535 bp downstream
Rr52274	regulatory region 52274	1619 bp distal
Rr59011	regulatory region 59011	624 bp proximal
Tssr26719	transcription start site region 26719	1388 bp downstream
Tssr26720	transcription start site region 26720	1445 bp downstream
Tssr26721	transcription start site region 26721	1467 bp downstream
Tssr26722	transcription start site region 26722	1567 bp downstream
Tssr26723	transcription start site region 26723	1657 bp downstream
Tssr26724	transcription start site region 26724	1738 bp downstream
Tssr26725	transcription start site region 26725	1787 bp downstream
Tssr26726	transcription start site region 26726	1846 bp downstream
Tssr26727	transcription start site region 26727	1884 bp downstream