rs259407230 SNP Detail

Summary

• ID
  rs259407230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56811847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTGGAG GAAGGCTTTG
  AGCTCTCATA TAAATGCTTG AGCTACACCC AGTGTGAGAC ATATTCGGTC TCCTCCTTGC
  TGCCTTCCAA TCAAGAGGTA GAGCTCTCTG CTCTTTGTCT CTAACCCTAA CCCTCAACCC
  CCTGCACACT GCTGTGCGTC CCAGCGTGAT AATAATGGAC TAAACCTCTG AACCTGTAAA
  R
  CCAGCCTTGA TTAAATGTTG TCTTTTATAA GAGTTGCCTT GGTGTGAAGA GTGTCAATTC
  ACAGAAATGA GACCCTAACT ATGGGTTGAG CCGGGAGTAG TGGCTTACAA TGGTTATCCA
  GGCATTTGGG AGGTGCAAGT AGGAACCACT TAGGGTTTAG CCTGCAGGAG ACCCTTTTCC
  TAAATGCATA CGTATATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859403	CHEV_19_56897905	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259407230					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56811847 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	873 bp downstream
Ccdc186	coiled-coil domain containing 186	1225 bp upstream
Cpgi11092	CpG island 11092	790 bp distal
Rr406045	regulatory region 406045	997 bp downstream
Rr550140	regulatory region 550140	1499 bp distal
Rr550141	regulatory region 550141	1236 bp distal
Rr550142	regulatory region 550142	735 bp distal
Tssr157215	transcription start site region 157215	1451 bp downstream
Tssr159886	transcription start site region 159886	1328 bp upstream
Tssr159887	transcription start site region 159887	1195 bp upstream