rs259407432 SNP Detail

Summary

• ID
  rs259407432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:32767480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCCTTG AAAAACGACA
  TTTGTGTATG GTAACTTTAC CCACACTGAG GACCTAGTCT CCCTTCCATC AGCATCAGCT
  TGAGAATCAT TTAGACTGTA CCGTAAAACG TAATTCTATC TGTAGTCACT ATTTCTTCCT
  CATTCTTAAT CACTGAACTA TGACCTTTCA ACACATGGCA TTCCTCTCTT TTTGTGGGCA
  Y
  ACTGAATTGT TTCCTAAGCA GAGGAGGCTC TTGGCTAAGA AATAAAATGA TTTCCTTGAA
  ACCCATCTTT ATCGGGCAAC GGAGGAGAGG TGGGGGATGA TGACCTCAGC CTTTTCAACG
  CACATATTGG AAATGCCAAA AACAGATTAG TCCATGCCAT GGGGTCTCCA CCAGCATTCA
  GTCCTGATTC TCTACAATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379945625	MGP_WTSI_10_32611290	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259407432					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379945625	MGP_WTSI_10_32611290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:32767480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1427	CpG island 1427	745 bp distal
Gm66462	predicted gene, 66462	within coordinates
Nkain2	Na+/K+ transporting ATPase interacting 2	1022 bp upstream
Rr214428	regulatory region 214428	280 bp distal
Rr224648	regulatory region 224648	279 bp distal
Tssr92885	transcription start site region 92885	1663 bp downstream
Tssr97216	transcription start site region 97216	1757 bp upstream
Tssr97217	transcription start site region 97217	1565 bp upstream
Tssr97218	transcription start site region 97218	1488 bp upstream
Tssr97219	transcription start site region 97219	1457 bp upstream
Tssr97220	transcription start site region 97220	1312 bp upstream