rs259411037 SNP Detail

Summary

• ID
  rs259411037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45867364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACATACATC TCTGAGGATG GAGACACGTG
  AGTAAACTGG CTAGGCTGAG ATAAGATGTT CAGTTAGAGC CCCCCTCCGA GCTGCAACTG
  GCTGGGCTAC CACCACCACT TCATCACCCG AGAGGATAGA CCCTCACAGC ACCTGCCCTG
  R
  AAGGGCCAGC CTCCTTCTCC AAACTCCAAA CTTAACTTGC AACTTGCTTT TAAGCTGTAG
  CCAGGTTCAG ACCAAAAACC AGACATCATC ACCTCTTTTG GGAGTGGACA GGATAGCAGT
  GCCCTTGTAA CCTAGAACAC CAGCCACAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403388	CHEV_17_45693387	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259411037					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45867364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	122 bp distal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	within coordinates
Rr370254	regulatory region 370254	1871 bp upstream
Rr405302	regulatory region 405302	665 bp downstream
Rr527427	regulatory region 527427	1464 bp distal
Rr527428	regulatory region 527428	717 bp distal
Rr527429	regulatory region 527429	273 bp proximal
Tssr144787	transcription start site region 144787	765 bp downstream
Tssr144788	transcription start site region 144788	724 bp downstream
Tssr144789	transcription start site region 144789	692 bp downstream
Tssr144790	transcription start site region 144790	639 bp downstream
Tssr144791	transcription start site region 144791	621 bp downstream
Tssr144792	transcription start site region 144792	538 bp downstream
Tssr144793	transcription start site region 144793	168 bp downstream