rs259413338 SNP Detail

Summary

• ID
  rs259413338
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4166114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTCCA TTGTATATGG
  GGGGAGGAAG TGAATTAAAA GAGCTTTTGT GGGGCTAGAG AGAACGCTCA GCTGCTAAAG
  GGTAGGCTCA CAACCACAAC GAGCTTTGGG AGGTGGATGT GATGCACATG CCTTTAATCT
  CAGTGTACAG AAGGCAGAGG TAAGTGGATC TTTATAAGTC TAAGGCCAGC CTGGTCTACA
  G
  AGAGAGTTTC AGGCCAGCCA GGACTACATA GTGAAATTCG GTCTCTTGGG GGGAAAAAGC
  TCTTGGGACT GGAATGATGG TTAACTGTTT AGAGGGGGAC GAGGGTACTC GCTGCACAAT
  CACAAGAACC TGAGTTCAAA TCCCCAGCAC CCATTCAAAA ACCCTCTAAG CCCAGCACGG
  AAGAGGGCAG GGGCAAGAAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322093635	CHEV_7_4114717	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259413338					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4166114 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	within coordinates
Gm73056	predicted gene, 73056	737 bp upstream
Rr641923	regulatory region 641923	266 bp proximal
Rr641924	regulatory region 641924	748 bp proximal
Rr641925	regulatory region 641925	1735 bp proximal
Tssr70452	transcription start site region 70452	1132 bp downstream
Tssr70453	transcription start site region 70453	1386 bp downstream
Tssr70454	transcription start site region 70454	1546 bp downstream
Tssr70455	transcription start site region 70455	1569 bp downstream
Tssr70456	transcription start site region 70456	1605 bp downstream
Tssr70457	transcription start site region 70457	1681 bp downstream
Tssr70458	transcription start site region 70458	1911 bp downstream