rs259415621 SNP Detail

Summary

• ID
  rs259415621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29578277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTGGGCT CCAGGATGGC
  TCACACTTGA TCCGAGGACA AAGACTAGCT TCAGTGGAGG GTCCTGGCTC AGGATCCATG
  GGAGAGCAAT GAATGAATGG CTTTCCAGCT TGAATGAGCA GAGCAGAGGC GCTGGTCACG
  TGTTCTAGAA ACCCTGAGTG ACCAAGAGGC AGATTTCCCT AGGGTGCTGT GATCAGGGGA
  Y
  CCTGAGGATG GAGTGCATGG AGGTCACCCT CCAGGTTCCC TGGGTCTTTG CTGGAGTCAT
  AGGACACTTA CCTGGGCTTC AGAAATGGCA GTTCTTCCCC TGTTCTTCCT GGGTGACCTC
  AGTCAGGTGT CTTGACTTCC ATTGGCCTCC ATTTCTGATA AGGGAGCACA CTGTGTAACA
  CAGCTATGGG AGTGAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325353627	CHEV_17_29496248	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259415621					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29578277 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	1601 bp upstream
Rr1771	regulatory region 1771	1425 bp distal
Rr405148	regulatory region 405148	1427 bp upstream
Rr524884	regulatory region 524884	1769 bp distal
Rr524885	regulatory region 524885	1422 bp proximal
Rr524886	regulatory region 524886	1819 bp proximal
Tssr143531	transcription start site region 143531	1606 bp upstream
Tssr143532	transcription start site region 143532	1620 bp upstream
Tssr143533	transcription start site region 143533	1653 bp upstream
Tssr143534	transcription start site region 143534	1666 bp upstream