rs259419305 SNP Detail

Summary

• ID
  rs259419305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTGGCCC GGATGCCCCC TTCGTTCTGT
  GACCTCACAT GGTCAGTTCT ACTTGCACAA ACCATATTCA CAAGAACATT GTACTAAGGA
  CAATTTTAGG TCTCCATCCA CATACTTATT CATCCAACAA GTGTTGGTTG AACTCCTGGC
  Y
  GCTACCAGGA ATTTTGCCAA ACAAATCAAT TAGCTGCTTC TCTTGATGCC TAAGTTGGAG
  ACTGGAGTTC TTTGTCTCTA GCACAGAGGG AGGGTGACCC CTGGGCAGCT CCTTCCAATC
  CATTGTCTTC CTCGGTTATT TATGTCTTTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342576	CHEV_2_72313070	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259419305					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305357 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	1183 bp upstream
Cpgi11756	CpG island 11756	899 bp proximal
Rr397036	regulatory region 397036	753 bp upstream
Rr558978	regulatory region 558978	within coordinates
Rr558979	regulatory region 558979	656 bp proximal
Rr558980	regulatory region 558980	1157 bp proximal
Tssr18351	transcription start site region 18351	983 bp upstream
Tssr18352	transcription start site region 18352	1160 bp upstream
Tssr18353	transcription start site region 18353	1200 bp upstream
Tssr18354	transcription start site region 18354	1212 bp upstream