rs259426064 SNP Detail

Summary

• ID
  rs259426064
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4704022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGAAGGG ACTGAGGCAT
  TCCGGTTTCA GTATCCAGCT GGGCAGCCGA GGTTAGCGTC GTGTGAAGGA GATAACCCCC
  TTAGCCGGAG CCTCTTGGTT CGACCCACTG TGGCTACTCA CGTGAGAGGT GGTGGTGGTG
  GTGGTGGTGG TGGTGGTGGT GGTGGCAAGC TTGGGAAGCG TAGTACGCAG GCGCATTGGC
  K
  GCCTGGCCTG GACTCCATTT CCCCTGGAAC TGCGGGGCGG GGGCGGGGGC GGGGCGCCGG
  GCCTAGGCCG GGGCGGCCGG GGGCGGGGGC TGTGGAGAGG TGCCGCGGCG GCGGCGGCGG
  TGGCGGCGGT GGGTACGCGT TGGTGCGGCC TGTTTTGGGC CATGTCCGTG TGAGGACGCC
  GCAGCCGACA ACCTCTCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395254927	MGP_WTSI_16_4886158	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259426064					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395254927	MGP_WTSI_16_4886158	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4704022 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7923	CpG island 7923	within coordinates
Gm60219	predicted gene, 60219	within coordinates
Gm60232	predicted gene, 60232	682 bp downstream
Mgrn1	mahogunin, ring finger 1	91 bp upstream
Rr510952	regulatory region 510952	within coordinates
Rr510953	regulatory region 510953	577 bp proximal
Tssr136882	transcription start site region 136882	8 bp downstream
Tssr136883	transcription start site region 136883	42 bp upstream
Tssr136884	transcription start site region 136884	50 bp upstream
Tssr136885	transcription start site region 136885	81 bp upstream
Tssr136886	transcription start site region 136886	113 bp upstream
Tssr136887	transcription start site region 136887	144 bp upstream