rs259432546 SNP Detail

Summary

• ID
  rs259432546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:32736554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACGTAGG CATGTTGCCT
  CAGAATCTTG CAGTGATTGT TTTTAGTTTC CTGGGTTGCA TTGGAAGATT TTTCTGAAAT
  GTGACTTGTG GACTGATTTG CATAACTTTA TAAGCATAGT CATCGTCAGC ATGGACGGTG
  CACATTTGAG GGTAGAAGTA GTTTTGTGTG TTTAAACCGA CGTAATTACA AATTTGGAGC
  Y
  TGCATTTGGA AGTTTTGTAG TTTAAAATCA ATAGTGCCAG AATATATATC ATTGGAGCTT
  TTAATAGAAC TTTGTTAAAT TAGACTTTCT TTCCTGATGA GATGTGGGAT AGGATATGAA
  ATTTGCATTT CAGTGGTATG TTCCATTCAT TTGACCTCGC CACACTTGAT AGAATGGAGA
  TCGAATAGTT TTTGATCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402294765	MGP_WTSI_19_32833644	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259432546					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402294765	MGP_WTSI_19_32833644	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32736554 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10762	CpG island 10762			644 bp distal
Gm36566	predicted gene, 36566			1742 bp upstream
Gm56643	predicted gene, 56643			1741 bp upstream
Gm58496	predicted gene, 58496			1494 bp downstream
Gm58497	predicted gene, 58497			1313 bp downstream
Pten	phosphatase and tensin homolog			Intron
				mRNA-UTR
Rr546565	regulatory region 546565			1440 bp distal
Rr546566	regulatory region 546566			1329 bp proximal
Tssr5485	transcription start site region 5485			1654 bp downstream
Tssr5486	transcription start site region 5486			1459 bp downstream
Tssr5487	transcription start site region 5487			1419 bp downstream
Tssr155992	transcription start site region 155992			1567 bp downstream
Tssr155993	transcription start site region 155993			1517 bp downstream
Tssr155994	transcription start site region 155994			1495 bp downstream
Tssr155995	transcription start site region 155995			743 bp downstream
Tssr158899	transcription start site region 158899			1816 bp upstream
Tssr158900	transcription start site region 158900			1771 bp upstream