rs259435130 SNP Detail

Summary

• ID
  rs259435130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141937880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG GCTAGGCATG CACAGAGGTT
  Y
  CCAAATCCTC TGAGGGGAAG CCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471190	CHEV_7_149570048	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259435130					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141937880 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	within coordinates
Gm49369	predicted gene, 49369	1476 bp upstream
Rr658152	regulatory region 658152	168 bp proximal
Rr658153	regulatory region 658153	1672 bp proximal
Tssr70143	transcription start site region 70143	1473 bp downstream
Tssr70144	transcription start site region 70144	668 bp downstream
Tssr70145	transcription start site region 70145	1315 bp upstream
Tssr70146	transcription start site region 70146	1347 bp upstream
Tssr75783	transcription start site region 75783	1423 bp upstream
Tssr75784	transcription start site region 75784	677 bp upstream
Tssr75785	transcription start site region 75785	648 bp upstream
Tssr75786	transcription start site region 75786	607 bp upstream
Tssr75787	transcription start site region 75787	1363 bp downstream
Tssr75788	transcription start site region 75788	1450 bp downstream
Tssr75789	transcription start site region 75789	1473 bp downstream
Tssr75790	transcription start site region 75790	1736 bp downstream
Tssr75791	transcription start site region 75791	1764 bp downstream
Tssr75792	transcription start site region 75792	1785 bp downstream