rs259443233 SNP Detail

Summary

• ID
  rs259443233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78450397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC CATTGCCAGG TTTGGGATGC
  Y
  TTCCCTTGAG GTATACCTTC AGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323756849	CHEV_11_78373073	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259443233					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78450397 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm157	DNA segment, Chr 11, Boehm 157	1603 bp proximal
D11Bhm181e	DNA segment, Chr 11, Boehm 181, expressed	1748 bp downstream
D11Mit353	DNA Segment, Chr 11 Massachusetts Institute of Technology 353	1638 bp proximal
Rr452025	regulatory region 452025	1909 bp distal
Rr452027	regulatory region 452027	939 bp proximal
Rr452028	regulatory region 452028	1064 bp proximal
Rr452029	regulatory region 452029	1260 bp proximal