rs259443498 SNP Detail

Summary

• ID
  rs259443498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74533331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCCTGAA TCTGTAGAAA
  TGACGGCCAT ATTCATGGGC AACCTCCCAA ATATATGGAG TTTTTAAAAG TGCCGTGTGT
  TACTGAGATC TGGGTCCTCA AAATTCCCCC CCCCATTCCA TTCCCAGACC TATTCATTCA
  GTCAATGTCC AAATACACCC ACGTTCCCCT GAACATCCAG GCCAAACAGT AGAATAAAAA
  R
  GGCACAGTTA CCGAGTTTTG CTCCAAGGCT TTATTGAAAA GAAAATCATT TCATTGCACA
  TTTGCAGGGC AGAAGTTCAA ATCCTAAAAA GTCAGAATCA GTTGTTAAAC TTCGCATTTG
  AAGGATACTT GAAAGAAAAA CGAAACCTAA TAAAACACCC TTGCCCTTGA CCACCCCCAA
  TAACACGTCC CCTATACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484996	MGP_WTSI_2_74541044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259443498					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484996	MGP_WTSI_2_74541044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74533331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	1019 bp proximal
Gm38462	predicted gene, 38462	16 bp downstream
Gm56188	predicted gene, 56188	1845 bp upstream
Gm75671	predicted gene, 75671	within coordinates
Hoxd8	homeobox D8	1642 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44607	regulatory region 44607	331 bp distal
Rr559360	regulatory region 559360	1528 bp distal
Rr559361	regulatory region 559361	within coordinates
Rr559362	regulatory region 559362	575 bp distal
Rr559363	regulatory region 559363	311 bp proximal
Rr559364	regulatory region 559364	1263 bp proximal
Rr559365	regulatory region 559365	1639 bp proximal
Rr559366	regulatory region 559366	1743 bp proximal
Rr559367	regulatory region 559367	1760 bp proximal
Tssr18420	transcription start site region 18420	1545 bp upstream
Tssr18421	transcription start site region 18421	1636 bp upstream
Tssr18422	transcription start site region 18422	1838 bp upstream
Tssr18423	transcription start site region 18423	1874 bp upstream
Tssr18424	transcription start site region 18424	1930 bp upstream